Here is a gallery of phylotree examples.
A working example with the minimal amount of coding.
A phylogenetic tree that interfaces with a D3.js bar chart to count classes of substitutions along portions of a phylogeny.
The simplest tree possible, with all default features disabled.
- Custom menu items
Adding a custom menu item to italicize node names. Leaf node menus now have an additional option “Italicize node label”.
- Radial tree
A tree with a button to toggle a radial layout.
- Branch coloring and thickness
Adjust color of branches by membership value and thickness by bootstrap value.
- Variable size and shape for leaf nodes
Draw different shapes and sizes for leaf nodes (based on haplotype diversity).
Example of zooming and panning.
- Leaf metadata
Visualize some artificial data associated with leaves of a tree.
- XML parsing
Parse PhyloXML or NexML formats.
- Large tree
Viewing a large tree with a Starcraft-style guide.
- Web application
A web application for visualizing and annotating phylogenetic trees. Load trees as files or text, make multiple named selections with a variety of mechanisms, and save annotated trees for further use.
- Ancestral sequence structural viewer
- Interactive tanglegram
A tanglegram to compare phylogenies inferred from muliple vs. single tissue samples. Crossings are minimized using a dynamic programming algorithm, and the single-tissue tree enables selections to highlight inter-tree crossings.